Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EAW30668.1 | EAW30669.1 | GP2143_00977 | GP2143_00982 | 16S ribosomal RNA m2G1207 methyltransferase; COG2813 16S RNA G1207 methylase RsmC. | Ribosomal small subunit pseudouridine synthase A; COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; Belongs to the pseudouridine synthase RsuA family. | 0.844 |
EAW30668.1 | EAW30670.1 | GP2143_00977 | GP2143_00987 | 16S ribosomal RNA m2G1207 methyltransferase; COG2813 16S RNA G1207 methylase RsmC. | COG0518 GMP synthase - Glutamine amidotransferase domain. | 0.759 |
EAW30668.1 | EAW30671.1 | GP2143_00977 | GP2143_00992 | 16S ribosomal RNA m2G1207 methyltransferase; COG2813 16S RNA G1207 methylase RsmC. | Hypothetical protein. | 0.643 |
EAW30668.1 | EAW30673.1 | GP2143_00977 | GP2143_01002 | 16S ribosomal RNA m2G1207 methyltransferase; COG2813 16S RNA G1207 methylase RsmC. | Hypothetical protein. | 0.427 |
EAW30668.1 | EAW30674.1 | GP2143_00977 | GP2143_01007 | 16S ribosomal RNA m2G1207 methyltransferase; COG2813 16S RNA G1207 methylase RsmC. | Hypothetical protein. | 0.427 |
EAW30668.1 | prfC | GP2143_00977 | GP2143_00997 | 16S ribosomal RNA m2G1207 methyltransferase; COG2813 16S RNA G1207 methylase RsmC. | Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | 0.649 |
EAW30669.1 | EAW30668.1 | GP2143_00982 | GP2143_00977 | Ribosomal small subunit pseudouridine synthase A; COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; Belongs to the pseudouridine synthase RsuA family. | 16S ribosomal RNA m2G1207 methyltransferase; COG2813 16S RNA G1207 methylase RsmC. | 0.844 |
EAW30669.1 | EAW30670.1 | GP2143_00982 | GP2143_00987 | Ribosomal small subunit pseudouridine synthase A; COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; Belongs to the pseudouridine synthase RsuA family. | COG0518 GMP synthase - Glutamine amidotransferase domain. | 0.759 |
EAW30669.1 | EAW30671.1 | GP2143_00982 | GP2143_00992 | Ribosomal small subunit pseudouridine synthase A; COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; Belongs to the pseudouridine synthase RsuA family. | Hypothetical protein. | 0.643 |
EAW30669.1 | EAW30673.1 | GP2143_00982 | GP2143_01002 | Ribosomal small subunit pseudouridine synthase A; COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; Belongs to the pseudouridine synthase RsuA family. | Hypothetical protein. | 0.427 |
EAW30669.1 | EAW30674.1 | GP2143_00982 | GP2143_01007 | Ribosomal small subunit pseudouridine synthase A; COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; Belongs to the pseudouridine synthase RsuA family. | Hypothetical protein. | 0.427 |
EAW30669.1 | prfC | GP2143_00982 | GP2143_00997 | Ribosomal small subunit pseudouridine synthase A; COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; Belongs to the pseudouridine synthase RsuA family. | Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | 0.643 |
EAW30670.1 | EAW30668.1 | GP2143_00987 | GP2143_00977 | COG0518 GMP synthase - Glutamine amidotransferase domain. | 16S ribosomal RNA m2G1207 methyltransferase; COG2813 16S RNA G1207 methylase RsmC. | 0.759 |
EAW30670.1 | EAW30669.1 | GP2143_00987 | GP2143_00982 | COG0518 GMP synthase - Glutamine amidotransferase domain. | Ribosomal small subunit pseudouridine synthase A; COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; Belongs to the pseudouridine synthase RsuA family. | 0.759 |
EAW30670.1 | EAW30671.1 | GP2143_00987 | GP2143_00992 | COG0518 GMP synthase - Glutamine amidotransferase domain. | Hypothetical protein. | 0.636 |
EAW30670.1 | EAW30673.1 | GP2143_00987 | GP2143_01002 | COG0518 GMP synthase - Glutamine amidotransferase domain. | Hypothetical protein. | 0.437 |
EAW30670.1 | EAW30674.1 | GP2143_00987 | GP2143_01007 | COG0518 GMP synthase - Glutamine amidotransferase domain. | Hypothetical protein. | 0.439 |
EAW30670.1 | prfC | GP2143_00987 | GP2143_00997 | COG0518 GMP synthase - Glutamine amidotransferase domain. | Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | 0.689 |
EAW30671.1 | EAW30668.1 | GP2143_00992 | GP2143_00977 | Hypothetical protein. | 16S ribosomal RNA m2G1207 methyltransferase; COG2813 16S RNA G1207 methylase RsmC. | 0.643 |
EAW30671.1 | EAW30669.1 | GP2143_00992 | GP2143_00982 | Hypothetical protein. | Ribosomal small subunit pseudouridine synthase A; COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases; Belongs to the pseudouridine synthase RsuA family. | 0.643 |
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