STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAW31906.1TPR domain protein; COG0457 FOG: TPR repeat. (669 aa)    
Predicted Functional Partners:
ribB
Bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.895
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
    0.833
EAW30759.1
TonB-dependent receptor.
  
     0.767
EAW31901.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.765
EAW30001.1
COG0457 FOG: TPR repeat.
    
 0.723
EAW31907.1
Invasion protein IbeA.
       0.690
EAW32146.1
Adenylate/guanylate cyclase; COG0642 Signal transduction histidine kinase.
    
  0.674
EAW30181.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.668
EAW29859.1
Hypothetical protein.
  
     0.656
EAW32960.1
Sensory box histidine kinase/response regulator; COG0642 Signal transduction histidine kinase.
     
 0.656
Your Current Organism:
gamma proteobacterium HTCC2143
NCBI taxonomy Id: 247633
Other names: Gammaproteobacteria sp. HTCC2143, m. gamma proteobacterium HTCC2143, marine gamma proteobacterium HTCC2143
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.