Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EAW31584.1 | EAW31585.1 | GP2143_08539 | GP2143_08544 | Hypothetical protein; COG0657 Esterase/lipase. | COG5267 Uncharacterized protein conserved in bacteria. | 0.586 |
EAW31584.1 | EAW31586.1 | GP2143_08539 | GP2143_08549 | Hypothetical protein; COG0657 Esterase/lipase. | COG4102 Uncharacterized protein conserved in bacteria. | 0.538 |
EAW31585.1 | EAW31584.1 | GP2143_08544 | GP2143_08539 | COG5267 Uncharacterized protein conserved in bacteria. | Hypothetical protein; COG0657 Esterase/lipase. | 0.586 |
EAW31585.1 | EAW31586.1 | GP2143_08544 | GP2143_08549 | COG5267 Uncharacterized protein conserved in bacteria. | COG4102 Uncharacterized protein conserved in bacteria. | 0.946 |
EAW31585.1 | dusA | GP2143_08544 | GP2143_08554 | COG5267 Uncharacterized protein conserved in bacteria. | Dihydrouridine synthase TIM-barrel protein yjbN; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily. | 0.431 |
EAW31586.1 | EAW31584.1 | GP2143_08549 | GP2143_08539 | COG4102 Uncharacterized protein conserved in bacteria. | Hypothetical protein; COG0657 Esterase/lipase. | 0.538 |
EAW31586.1 | EAW31585.1 | GP2143_08549 | GP2143_08544 | COG4102 Uncharacterized protein conserved in bacteria. | COG5267 Uncharacterized protein conserved in bacteria. | 0.946 |
EAW31586.1 | dusA | GP2143_08549 | GP2143_08554 | COG4102 Uncharacterized protein conserved in bacteria. | Dihydrouridine synthase TIM-barrel protein yjbN; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily. | 0.467 |
dusA | EAW31585.1 | GP2143_08554 | GP2143_08544 | Dihydrouridine synthase TIM-barrel protein yjbN; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily. | COG5267 Uncharacterized protein conserved in bacteria. | 0.431 |
dusA | EAW31586.1 | GP2143_08554 | GP2143_08549 | Dihydrouridine synthase TIM-barrel protein yjbN; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily. | COG4102 Uncharacterized protein conserved in bacteria. | 0.467 |