STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB77943.1Methyltransferase domain family protein; [QR] COG0500 SAM-dependent methyltransferases. (245 aa)    
Predicted Functional Partners:
EEB77892.1
Hypothetical protein.
 
     0.807
EEB77874.1
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
    0.782
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
 
 0.540
EEB78147.1
HAD-superfamily subfamily IB hydrolase, TIGR01490, putative; [E] COG0560 Phosphoserine phosphatase; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.
   
 0.481
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
  
 
 0.462
EEB78066.1
Hypothetical protein; [H] COG2941 Ubiquinone biosynthesis protein COQ7; Belongs to the COQ7 family.
  
 
 0.434
EEB78555.1
[Q] COG2124 Cytochrome P450.
    
  0.428
EEB78788.1
[Q] COG2124 Cytochrome P450.
    
  0.428
EEB78851.1
[Q] COG2124 Cytochrome P450.
    
  0.428
EEB78894.1
[Q] COG2124 Cytochrome P450.
    
  0.428
Your Current Organism:
gamma proteobacterium HTCC2148
NCBI taxonomy Id: 247634
Other names: m. gamma proteobacterium HTCC2148, marine gamma proteobacterium HTCC2148
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