STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB79226.1FAD dependent oxidoreductase, putative; [Q] COG1233 Phytoene dehydrogenase and related proteins; overlaps another CDS with the same product name. (511 aa)    
Predicted Functional Partners:
EEB79241.1
FAD dependent oxidoreductase, putative; [Q] COG1233 Phytoene dehydrogenase and related proteins; overlaps another CDS with the same product name.
 
    
0.815
EEB79200.1
Glycine cleavage T-protein (aminomethyl transferase); [R] COG0354 Predicted aminomethyltransferase related to GcvT; Belongs to the GcvT family.
 
     0.808
EEB79199.1
Transcriptional regulator, AraC family; [K] COG2207 AraC-type DNA-binding domain-containing proteins.
       0.538
Your Current Organism:
gamma proteobacterium HTCC2148
NCBI taxonomy Id: 247634
Other names: m. gamma proteobacterium HTCC2148, marine gamma proteobacterium HTCC2148
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