STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB76893.1Acyltransferase domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (385 aa)    
Predicted Functional Partners:
dinG
Hypothetical protein; DNA-dependent ATPase and 5'-3' DNA helicase.
 
   
 0.881
EEB76904.1
[S] COG3098 Uncharacterized protein conserved in bacteria.
 
     0.705
EEB78312.1
Beta-ketoacyl synthase, C-terminal domain protein; [IQ] COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
  
 0.646
EEB78440.1
Hypothetical protein; [T] COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).
  
    0.635
dapD
Hypothetical protein; Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2-amino-6-oxopimelate using succinyl-CoA.
 
     0.578
EEB78834.1
[J] COG3130 Ribosome modulation factor.
  
     0.534
EEB77719.1
Hypothetical protein; [I] COG2267 Lysophospholipase.
 
 0.527
EEB76896.1
Hypothetical protein.
       0.522
EEB78922.1
Putative response regulator recevier domain protein; [T] COG0784 FOG: CheY-like receiver.
  
 
 0.513
EEB80367.1
Response regulator receiver domain protein; [T] COG0642 Signal transduction histidine kinase.
  
 
 0.512
Your Current Organism:
gamma proteobacterium HTCC2148
NCBI taxonomy Id: 247634
Other names: m. gamma proteobacterium HTCC2148, marine gamma proteobacterium HTCC2148
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.