STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB78967.1HD domain protein; [R] COG4341 Predicted HD phosphohydrolase. (195 aa)    
Predicted Functional Partners:
EEB76945.1
[Q] COG2175 Probable taurine catabolism dioxygenase.
     0.657
EEB76949.1
[Q] COG2175 Probable taurine catabolism dioxygenase.
     0.595
EEB79712.1
[H] COG5598 Trimethylamine:corrinoid methyltransferase; Belongs to the trimethylamine methyltransferase family.
  
     0.574
EEB78767.1
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
     0.538
EEB76936.1
Hypothetical protein; [G] COG0362 6-phosphogluconate dehydrogenase; NAD binding domain of 6-phosphogluconate dehydrogenase family.
  
     0.533
lcdH
3-hydroxyacyl-CoA dehydrogenase, C-terminal domain family; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
 
     0.467
EEB77493.1
[Q] COG2175 Probable taurine catabolism dioxygenase.
 
     0.431
EEB76948.1
[S] COG3246 Uncharacterized conserved protein.
 
     0.430
EEB76934.1
Mandelate racemase / muconate lactonizing enzyme, C-terminal domain protein; [MR] COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
     0.406
EEB78503.1
Hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.401
Your Current Organism:
gamma proteobacterium HTCC2148
NCBI taxonomy Id: 247634
Other names: m. gamma proteobacterium HTCC2148, marine gamma proteobacterium HTCC2148
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.