STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB77074.1Drug resistance transporter, Bcr/CflA subfamily; [GEPR] COG0477 Permeases of the major facilitator superfamily. (400 aa)    
Predicted Functional Partners:
EEB80061.1
[GEPR] COG0477 Permeases of the major facilitator superfamily.
  
   
 0.725
EEB77096.1
Pyridoxal-phosphate dependent enzyme superfamily protein; [E] COG0031 Cysteine synthase.
  
 
 0.649
EEB77106.1
NAD dependent epimerase/dehydratase family protein; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.623
EEB78561.1
Homoserine dehydrogenase, NAD binding domain family; [E] COG0460 Homoserine dehydrogenase.
   
  0.556
EEB78571.1
Prephenate dehydratase domain protein; [E] COG1605 Chorismate mutase.
  
 
 0.508
metH
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
  0.475
EEB77099.1
Transcriptional regulator, AsnC family; [K] COG1522 Transcriptional regulators.
       0.426
EEB78244.1
Putative auxiliary transport protein, MFP family; [M] COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.416
Your Current Organism:
gamma proteobacterium HTCC2148
NCBI taxonomy Id: 247634
Other names: m. gamma proteobacterium HTCC2148, marine gamma proteobacterium HTCC2148
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