STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB76765.1[NU] COG3215 Tfp pilus assembly protein PilZ. (117 aa)    
Predicted Functional Partners:
EEB79085.1
Conserved hypothetical protein; [T] COG2199 FOG: GGDEF domain.
    
 
 0.985
EEB77971.1
Cyclic diguanylate phosphodiesterase domain protein; [T] COG2200 FOG: EAL domain.
    
 
 0.985
EEB79577.1
[T] COG2199 FOG: GGDEF domain.
   
  0.856
EEB77450.1
Response regulator receiver domain protein; [T] COG0784 FOG: CheY-like receiver.
   
  0.856
EEB77165.1
Sensors of blue-light using FAD family; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
 
   0.837
EEB76763.1
Hypothetical protein; [L] COG2812 DNA polymerase III, gamma/tau subunits.
     
 0.816
pilB
Type IV-A pilus assembly ATPase PilB; [NU] COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis.
  
 
 
 0.815
EEB77650.1
[NU] COG3168 Tfp pilus assembly protein PilP.
  
   
 0.805
EEB77794.1
[NU] COG4972 Tfp pilus assembly protein, ATPase PilM.
  
   
 0.805
EEB77755.1
[NU] COG3166 Tfp pilus assembly protein PilN.
  
   
 0.801
Your Current Organism:
gamma proteobacterium HTCC2148
NCBI taxonomy Id: 247634
Other names: m. gamma proteobacterium HTCC2148, marine gamma proteobacterium HTCC2148
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