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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB77650.1[NU] COG3168 Tfp pilus assembly protein PilP. (178 aa)    
Predicted Functional Partners:
EEB77709.1
[NU] COG3167 Tfp pilus assembly protein PilO.
 
 
 0.998
EEB77755.1
[NU] COG3166 Tfp pilus assembly protein PilN.
 
 
 0.998
EEB77794.1
[NU] COG4972 Tfp pilus assembly protein, ATPase PilM.
 
 
 0.992
EEB77122.1
LysM domain protein; [S] COG1652 Uncharacterized protein containing LysM domain.
 
 
   0.950
EEB77745.1
Type IV pilus secretin PilQ subfamily, putative; [NU] COG1450 Type II secretory pathway, component PulD.
 
     0.889
EEB76765.1
[NU] COG3215 Tfp pilus assembly protein PilZ.
  
   
 0.805
EEB80137.1
Bacterial type II secretion system protein F domain; [NU] COG1459 Type II secretory pathway, component PulF.
  
 
 
 0.802
EEB77321.1
Hypothetical protein.
  
 
 0.796
EEB78939.1
Prokaryotic N-terminal methylation motif domain protein; [NU] COG4970 Tfp pilus assembly protein FimT.
  
  
 0.794
pilV_2
[NU] COG4967 Tfp pilus assembly protein PilV.
  
  
 0.782
Your Current Organism:
gamma proteobacterium HTCC2148
NCBI taxonomy Id: 247634
Other names: m. gamma proteobacterium HTCC2148, marine gamma proteobacterium HTCC2148
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