EEB77650.1 protein (gamma proteobacterium HTCC2148)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EEB77650.1

[NU] COG3168 Tfp pilus assembly protein PilP. (178 aa)

Predicted Functional Partners:

EEB77755.1

0.995

EEB77709.1

0.994

EEB77794.1

0.978

EEB77745.1

0.891

EEB76765.1

0.824

EEB78939.1

0.820

EEB78789.1

0.809

EEB77541.1

0.793

pilV_2

0.784

EEB77122.1

0.774

Your Current Organism:

gamma proteobacterium HTCC2148

NCBI taxonomy Id: 247634
Other names: m. gamma proteobacterium HTCC2148, marine gamma proteobacterium HTCC2148

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EEB76765.1	EEB77122.1	GPB2148_571	GPB2148_466	[NU] COG3215 Tfp pilus assembly protein PilZ.	LysM domain protein; [S] COG1652 Uncharacterized protein containing LysM domain.	0.783
EEB76765.1	EEB77541.1	GPB2148_571	GPB2148_1274	[NU] COG3215 Tfp pilus assembly protein PilZ.	Prokaryotic N-terminal methylation motif domain protein; [NU] COG4970 Tfp pilus assembly protein FimT.	0.740
EEB76765.1	EEB77650.1	GPB2148_571	GPB2148_586	[NU] COG3215 Tfp pilus assembly protein PilZ.	[NU] COG3168 Tfp pilus assembly protein PilP.	0.824
EEB76765.1	EEB77709.1	GPB2148_571	GPB2148_645	[NU] COG3215 Tfp pilus assembly protein PilZ.	[NU] COG3167 Tfp pilus assembly protein PilO.	0.816
EEB76765.1	EEB77745.1	GPB2148_571	GPB2148_681	[NU] COG3215 Tfp pilus assembly protein PilZ.	Type IV pilus secretin PilQ subfamily, putative; [NU] COG1450 Type II secretory pathway, component PulD.	0.741
EEB76765.1	EEB77755.1	GPB2148_571	GPB2148_691	[NU] COG3215 Tfp pilus assembly protein PilZ.	[NU] COG3166 Tfp pilus assembly protein PilN.	0.820
EEB76765.1	EEB77794.1	GPB2148_571	GPB2148_730	[NU] COG3215 Tfp pilus assembly protein PilZ.	[NU] COG4972 Tfp pilus assembly protein, ATPase PilM.	0.853
EEB76765.1	EEB78789.1	GPB2148_571	GPB2148_1997	[NU] COG3215 Tfp pilus assembly protein PilZ.	[NU] COG4968 Tfp pilus assembly protein PilE.	0.747
EEB76765.1	EEB78939.1	GPB2148_571	GPB2148_2147	[NU] COG3215 Tfp pilus assembly protein PilZ.	Prokaryotic N-terminal methylation motif domain protein; [NU] COG4970 Tfp pilus assembly protein FimT.	0.715
EEB76765.1	pilV_2	GPB2148_571	GPB2148_1281	[NU] COG3215 Tfp pilus assembly protein PilZ.	[NU] COG4967 Tfp pilus assembly protein PilV.	0.712
EEB77122.1	EEB76765.1	GPB2148_466	GPB2148_571	LysM domain protein; [S] COG1652 Uncharacterized protein containing LysM domain.	[NU] COG3215 Tfp pilus assembly protein PilZ.	0.783
EEB77122.1	EEB77541.1	GPB2148_466	GPB2148_1274	LysM domain protein; [S] COG1652 Uncharacterized protein containing LysM domain.	Prokaryotic N-terminal methylation motif domain protein; [NU] COG4970 Tfp pilus assembly protein FimT.	0.702
EEB77122.1	EEB77650.1	GPB2148_466	GPB2148_586	LysM domain protein; [S] COG1652 Uncharacterized protein containing LysM domain.	[NU] COG3168 Tfp pilus assembly protein PilP.	0.774
EEB77122.1	EEB77709.1	GPB2148_466	GPB2148_645	LysM domain protein; [S] COG1652 Uncharacterized protein containing LysM domain.	[NU] COG3167 Tfp pilus assembly protein PilO.	0.928
EEB77122.1	EEB77745.1	GPB2148_466	GPB2148_681	LysM domain protein; [S] COG1652 Uncharacterized protein containing LysM domain.	Type IV pilus secretin PilQ subfamily, putative; [NU] COG1450 Type II secretory pathway, component PulD.	0.775
EEB77122.1	EEB77755.1	GPB2148_466	GPB2148_691	LysM domain protein; [S] COG1652 Uncharacterized protein containing LysM domain.	[NU] COG3166 Tfp pilus assembly protein PilN.	0.926
EEB77122.1	EEB77794.1	GPB2148_466	GPB2148_730	LysM domain protein; [S] COG1652 Uncharacterized protein containing LysM domain.	[NU] COG4972 Tfp pilus assembly protein, ATPase PilM.	0.925
EEB77122.1	EEB78789.1	GPB2148_466	GPB2148_1997	LysM domain protein; [S] COG1652 Uncharacterized protein containing LysM domain.	[NU] COG4968 Tfp pilus assembly protein PilE.	0.680
EEB77122.1	EEB78939.1	GPB2148_466	GPB2148_2147	LysM domain protein; [S] COG1652 Uncharacterized protein containing LysM domain.	Prokaryotic N-terminal methylation motif domain protein; [NU] COG4970 Tfp pilus assembly protein FimT.	0.726
EEB77122.1	pilV_2	GPB2148_466	GPB2148_1281	LysM domain protein; [S] COG1652 Uncharacterized protein containing LysM domain.	[NU] COG4967 Tfp pilus assembly protein PilV.	0.675