STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEB77733.1Selenide, water dikinase, putative; [C] COG1251 NAD(P)H-nitrite reductase. (738 aa)    
Predicted Functional Partners:
ybbB
tRNA 2-selenouridine synthase; Involved in the post-transcriptional modification of the uridine at the wobble position (U34) of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Catalyzes the conversion of 2-thiouridine (S2U-RNA) to 2- selenouridine (Se2U-RNA). Acts in a two-step process involving geranylation of 2-thiouridine (S2U) to S-geranyl-2-thiouridine (geS2U) and subsequent selenation of the latter derivative to 2-selenouridine (Se2U) in the tRNA chain.
 
   
 0.956
trxB
Thioredoxin-disulfide reductase; [C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes.
    
 0.916
EEB77124.1
Thioredoxin, putative; [OC] COG0526 Thiol-disulfide isomerase and thioredoxins.
   
 0.877
EEB77309.1
Thioredoxin domain protein; [L] COG0470 ATPase involved in DNA replication.
   
 0.877
nuoC
Putative NADH dehydrogenase, subunit C subfamily; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the C-terminal section; belongs to the complex I 49 kDa subunit family.
    
 0.875
EEB79908.1
tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA, putative; [R] COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases; Belongs to the GcvT family.
    
 0.858
EEB79953.1
4Fe-4S binding domain protein; [O] COG0492 Thioredoxin reductase.
  
 
 0.849
EEB78801.1
Aminotransferase, class V superfamily; [E] COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes.
    
 0.817
EEB79371.1
Proton-translocating NADH-quinone oxidoreductase, chain L subfamily; [CP] COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit.
  
 
 0.807
EEB76851.1
Aminotransferase, class V family; [E] COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes.
    
 0.793
Your Current Organism:
gamma proteobacterium HTCC2148
NCBI taxonomy Id: 247634
Other names: m. gamma proteobacterium HTCC2148, marine gamma proteobacterium HTCC2148
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