STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SQSTM1Sequestosome 1. (452 aa)    
Predicted Functional Partners:
TRAF6
TNF receptor associated factor 6.
    
 0.993
NBR1
NBR1 autophagy cargo receptor.
    
 0.986
UBB
Ubiquitin B.
   
 0.977
GABARAPL1
GABA type A receptor associated protein like 1.
   
 0.974
ENSSHBP00005001214
annotation not available
   
 0.964
GABARAPL2
GABA type A receptor associated protein like 2.
   
 0.964
ENSSHBP00005000043
annotation not available
   
 0.953
LOC115600588
Microtubule-associated proteins 1A/1B light chain 3B-like.
   
 0.953
PRKCI
Protein kinase C iota.
    
 0.952
PRKCZ
Protein kinase C zeta.
    
 0.952
Your Current Organism:
Strigops habroptila
NCBI taxonomy Id: 2489341
Other names: Kakapo, S. habroptila, Strigops habroptilis, Strigops habroptilus, owl parrot
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.