STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSM12LSM12 homolog. (194 aa)    
Predicted Functional Partners:
ATXN2
Ataxin 2.
    
 0.998
DDX6
DEAD-box helicase 6.
    
 0.954
TRNAU1AP
tRNA selenocysteine 1 associated protein 1.
    
 
 0.915
DDX20
DEAD-box helicase 20.
    
 0.719
NUFIP2
Nuclear FMR1 interacting protein 2.
    
 
 0.685
LSM1
LSM1 homolog, mRNA degradation associated.
   
 
 0.676
PUM1
Pumilio RNA binding family member 1.
    
   0.666
PUM2
Pumilio RNA binding family member 2.
    
   0.666
RTRAF
RNA transcription, translation and transport factor.
    
 
 0.665
LSM2
LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 
 0.659
Your Current Organism:
Strigops habroptila
NCBI taxonomy Id: 2489341
Other names: Kakapo, S. habroptila, Strigops habroptilis, Strigops habroptilus, owl parrot
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.