Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OJG45071.1 | OJG45798.1 | RV04_GL002385 | RV04_GL001564 | Hypothetical protein. | Cof family protein. | 0.569 |
OJG45071.1 | OJG46800.1 | RV04_GL002385 | RV04_GL000047 | Hypothetical protein. | Hypothetical protein. | 0.759 |
OJG45071.1 | divIB | RV04_GL002385 | RV04_GL000039 | Hypothetical protein. | Hypothetical protein; Cell division protein that may be involved in stabilizing or promoting the assembly of the division complex; Belongs to the FtsQ/DivIB family. DivIB subfamily. | 0.411 |
OJG45071.1 | ftsL | RV04_GL002385 | RV04_GL000044 | Hypothetical protein. | Cell division protein FtsL; Essential cell division protein; Belongs to the FtsL family. | 0.624 |
OJG45798.1 | OJG45071.1 | RV04_GL001564 | RV04_GL002385 | Cof family protein. | Hypothetical protein. | 0.569 |
OJG45798.1 | OJG46800.1 | RV04_GL001564 | RV04_GL000047 | Cof family protein. | Hypothetical protein. | 0.750 |
OJG45798.1 | ftsL | RV04_GL001564 | RV04_GL000044 | Cof family protein. | Cell division protein FtsL; Essential cell division protein; Belongs to the FtsL family. | 0.640 |
OJG46796.1 | OJG46800.1 | RV04_GL000043 | RV04_GL000047 | Penicillin-binding protein 2X. | Hypothetical protein. | 0.790 |
OJG46796.1 | divIB | RV04_GL000043 | RV04_GL000039 | Penicillin-binding protein 2X. | Hypothetical protein; Cell division protein that may be involved in stabilizing or promoting the assembly of the division complex; Belongs to the FtsQ/DivIB family. DivIB subfamily. | 0.978 |
OJG46796.1 | ftsL | RV04_GL000043 | RV04_GL000044 | Penicillin-binding protein 2X. | Cell division protein FtsL; Essential cell division protein; Belongs to the FtsL family. | 0.945 |
OJG46796.1 | mraY | RV04_GL000043 | RV04_GL000042 | Penicillin-binding protein 2X. | phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.958 |
OJG46796.1 | mraZ | RV04_GL000043 | RV04_GL000046 | Penicillin-binding protein 2X. | Protein MraZ; Belongs to the MraZ family. | 0.880 |
OJG46796.1 | murD | RV04_GL000043 | RV04_GL000041 | Penicillin-binding protein 2X. | UDP-N-acetylmuramoylalanine-D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.963 |
OJG46796.1 | murG | RV04_GL000043 | RV04_GL000040 | Penicillin-binding protein 2X. | Undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.921 |
OJG46796.1 | rsmH | RV04_GL000043 | RV04_GL000045 | Penicillin-binding protein 2X. | Ribosomal RNA small subunit methyltransferase H; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. | 0.930 |
OJG46800.1 | OJG45071.1 | RV04_GL000047 | RV04_GL002385 | Hypothetical protein. | Hypothetical protein. | 0.759 |
OJG46800.1 | OJG45798.1 | RV04_GL000047 | RV04_GL001564 | Hypothetical protein. | Cof family protein. | 0.750 |
OJG46800.1 | OJG46796.1 | RV04_GL000047 | RV04_GL000043 | Hypothetical protein. | Penicillin-binding protein 2X. | 0.790 |
OJG46800.1 | divIB | RV04_GL000047 | RV04_GL000039 | Hypothetical protein. | Hypothetical protein; Cell division protein that may be involved in stabilizing or promoting the assembly of the division complex; Belongs to the FtsQ/DivIB family. DivIB subfamily. | 0.794 |
OJG46800.1 | ftsL | RV04_GL000047 | RV04_GL000044 | Hypothetical protein. | Cell division protein FtsL; Essential cell division protein; Belongs to the FtsL family. | 0.936 |
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