STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN50836.1Threonine/homoserine/homoserine lactone efflux protein. (211 aa)    
Predicted Functional Partners:
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
       0.734
SHN50824.1
methylated-DNA-protein-cysteine methyltransferase related protein.
       0.717
SHN57955.1
Family of unknown function.
  
     0.645
SHN77970.1
Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase.
  
     0.631
SHN53119.1
Hypothetical protein.
  
     0.618
SHN63949.1
Type IX secretion system membrane protein, PorP/SprF family.
  
     0.614
SHN50571.1
Hypothetical protein.
  
     0.607
SHN70155.1
Hypothetical protein.
  
     0.595
SHN74397.1
Hypothetical protein.
  
     0.564
SHN51657.1
Protein of unknown function.
  
     0.563
Your Current Organism:
Flavobacterium fryxellicola
NCBI taxonomy Id: 249352
Other names: CIP 108325, DSM 16209, F. fryxellicola, Flavobacterium fryxellicola Van Trappen et al. 2005 emend. Hahnke et al. 2016, LMG 22022, LMG:22022
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.