STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN53226.1Hypothetical protein. (489 aa)    
Predicted Functional Partners:
SHN53231.1
ABC-2 type transport system ATP-binding protein.
 
     0.903
SHN53220.1
Hypothetical protein.
       0.670
SHN53215.1
Hypothetical protein.
       0.618
SHN67102.1
Membrane protein involved in the export of O-antigen and teichoic acid.
  
     0.585
SHN54995.1
Hypothetical protein.
  
     0.554
SHN52828.1
Putative auto-transporter adhesin, head GIN domain.
  
     0.545
SHN60315.1
Hypothetical protein.
  
     0.533
SHN73730.1
Hypothetical protein.
  
     0.479
SHN53184.1
DNA-binding transcriptional regulator, PadR family.
       0.465
SHN53970.1
Putative DNA-binding domain-containing protein.
  
     0.455
Your Current Organism:
Flavobacterium fryxellicola
NCBI taxonomy Id: 249352
Other names: CIP 108325, DSM 16209, F. fryxellicola, Flavobacterium fryxellicola Van Trappen et al. 2005 emend. Hahnke et al. 2016, LMG 22022, LMG:22022
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.