STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN54093.1Hypothetical protein. (118 aa)    
Predicted Functional Partners:
SHN53668.1
Protein of unknown function.
  
     0.762
SHN65201.1
Protein involved in gliding motility GldC.
  
     0.760
SHN57867.1
Hypothetical protein.
  
     0.725
SHN67341.1
Acyl-CoA reductase (LuxC).
  
     0.718
SHN72986.1
ATP-dependent Clp protease adaptor protein ClpS; Belongs to the ClpS family.
  
     0.672
SHN74250.1
Hypothetical protein.
  
     0.667
SHN66857.1
Protein of unknown function.
  
     0.664
SHN54085.1
Membrane protein required for colicin V production.
       0.642
SHN52818.1
Threonine/homoserine/homoserine lactone efflux protein.
  
     0.635
SHN52927.1
GH3 auxin-responsive promoter.
  
     0.632
Your Current Organism:
Flavobacterium fryxellicola
NCBI taxonomy Id: 249352
Other names: CIP 108325, DSM 16209, F. fryxellicola, Flavobacterium fryxellicola Van Trappen et al. 2005 emend. Hahnke et al. 2016, LMG 22022, LMG:22022
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.