STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN55319.1Protein of unknown function. (223 aa)    
Predicted Functional Partners:
SHN55305.1
uroporphyrinogen-III synthase.
       0.821
SHN55345.1
Protein of unknown function.
 
     0.789
SHN53119.1
Hypothetical protein.
  
     0.774
SHN50571.1
Hypothetical protein.
  
     0.773
SHN74319.1
Hypothetical protein.
  
     0.764
SHN67176.1
Hypothetical protein.
  
     0.762
SHN61394.1
Hypothetical protein.
  
     0.754
SHN51043.1
Aspartyl protease.
  
     0.751
SHN51657.1
Protein of unknown function.
  
     0.750
SHN57955.1
Family of unknown function.
  
     0.744
Your Current Organism:
Flavobacterium fryxellicola
NCBI taxonomy Id: 249352
Other names: CIP 108325, DSM 16209, F. fryxellicola, Flavobacterium fryxellicola Van Trappen et al. 2005 emend. Hahnke et al. 2016, LMG 22022, LMG:22022
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.