STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN59237.1Hypothetical protein. (162 aa)    
Predicted Functional Partners:
SHN55305.1
uroporphyrinogen-III synthase.
  
     0.767
SHN54835.1
Uncharacterized metal-binding protein YceD, DUF177 family.
  
     0.764
SHN61650.1
Protein of unknown function.
  
     0.747
SHN64526.1
Protein of unknown function.
  
     0.703
SHN78171.1
Protein of unknown function.
  
     0.686
SHN59231.1
XTP/dITP diphosphohydrolase.
       0.675
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
       0.664
SHN72953.1
DoxX protein.
  
     0.657
SHN72805.1
RNA polymerase Rpb6.
  
     0.655
SHN59119.1
Protein of unknown function.
  
     0.636
Your Current Organism:
Flavobacterium fryxellicola
NCBI taxonomy Id: 249352
Other names: CIP 108325, DSM 16209, F. fryxellicola, Flavobacterium fryxellicola Van Trappen et al. 2005 emend. Hahnke et al. 2016, LMG 22022, LMG:22022
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.