STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN59575.1PAS domain S-box-containing protein. (609 aa)    
Predicted Functional Partners:
SHN59780.1
Signal transduction histidine kinase.
 0.999
SHN65122.1
Helix-turn-helix domain-containing protein.
 
 0.999
SHN67804.1
PAS domain S-box-containing protein.
 
0.999
SHN67845.1
Hpt domain-containing protein.
 0.999
SHN68165.1
PAS domain S-box-containing protein.
 
0.999
SHN71048.1
PAS domain S-box-containing protein.
 0.999
SHN71051.1
Signal transduction histidine kinase.
 
 0.999
SHN71073.1
PAS domain S-box-containing protein.
0.999
SHN73781.1
PAS domain S-box-containing protein.
 0.999
SHN76582.1
PAS domain S-box-containing protein.
  
 0.999
Your Current Organism:
Flavobacterium fryxellicola
NCBI taxonomy Id: 249352
Other names: CIP 108325, DSM 16209, F. fryxellicola, Flavobacterium fryxellicola Van Trappen et al. 2005 emend. Hahnke et al. 2016, LMG 22022, LMG:22022
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.