STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN61855.1Cadherin-like. (1774 aa)    
Predicted Functional Partners:
SHN61863.1
Hypothetical protein.
       0.590
SHN73673.1
Por secretion system C-terminal sorting domain-containing protein; Belongs to the peptidase S8 family.
  
  
 0.534
SHN64505.1
Gliding motility-associated C-terminal domain-containing protein.
  
 
  0.479
SHN59830.1
Gliding motility-associated C-terminal domain-containing protein.
  
 
  0.475
SHN70813.1
Protein of unknown function.
  
 
  0.473
SHN53897.1
Hypothetical protein.
  
 
  0.472
SHN60025.1
Hypothetical protein.
  
 
  0.470
SHN58439.1
Por secretion system C-terminal sorting domain-containing protein.
 
  
  0.466
SHN59633.1
Gliding motility-associated C-terminal domain-containing protein.
  
 
  0.465
SHN58430.1
Por secretion system C-terminal sorting domain-containing protein.
  
  
  0.460
Your Current Organism:
Flavobacterium fryxellicola
NCBI taxonomy Id: 249352
Other names: CIP 108325, DSM 16209, F. fryxellicola, Flavobacterium fryxellicola Van Trappen et al. 2005 emend. Hahnke et al. 2016, LMG 22022, LMG:22022
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