Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHN50993.1 | SHN63640.1 | SAMN05444395_101227 | SAMN05444395_10334 | Hypothetical protein. | SusD family protein. | 0.728 |
SHN50993.1 | SHN71477.1 | SAMN05444395_101227 | SAMN05444395_106173 | Hypothetical protein. | Predicted naringenin-chalcone synthase. | 0.418 |
SHN50993.1 | atpE | SAMN05444395_101227 | SAMN05444395_101499 | Hypothetical protein. | ATP synthase F0 subcomplex C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.473 |
SHN63630.1 | SHN63640.1 | SAMN05444395_10333 | SAMN05444395_10334 | Iron complex outermembrane recepter protein. | SusD family protein. | 0.944 |
SHN63630.1 | SHN63656.1 | SAMN05444395_10333 | SAMN05444395_10335 | Iron complex outermembrane recepter protein. | Repeat domain-containing protein. | 0.805 |
SHN63630.1 | SHN63669.1 | SAMN05444395_10333 | SAMN05444395_10336 | Iron complex outermembrane recepter protein. | Repeat domain-containing protein. | 0.807 |
SHN63630.1 | SHN63679.1 | SAMN05444395_10333 | SAMN05444395_10337 | Iron complex outermembrane recepter protein. | PAP2 superfamily protein. | 0.723 |
SHN63630.1 | SHN63691.1 | SAMN05444395_10333 | SAMN05444395_10338 | Iron complex outermembrane recepter protein. | Effector-binding domain-containing protein. | 0.730 |
SHN63640.1 | SHN50993.1 | SAMN05444395_10334 | SAMN05444395_101227 | SusD family protein. | Hypothetical protein. | 0.728 |
SHN63640.1 | SHN63630.1 | SAMN05444395_10334 | SAMN05444395_10333 | SusD family protein. | Iron complex outermembrane recepter protein. | 0.944 |
SHN63640.1 | SHN63656.1 | SAMN05444395_10334 | SAMN05444395_10335 | SusD family protein. | Repeat domain-containing protein. | 0.866 |
SHN63640.1 | SHN63669.1 | SAMN05444395_10334 | SAMN05444395_10336 | SusD family protein. | Repeat domain-containing protein. | 0.863 |
SHN63640.1 | SHN63679.1 | SAMN05444395_10334 | SAMN05444395_10337 | SusD family protein. | PAP2 superfamily protein. | 0.826 |
SHN63640.1 | SHN63691.1 | SAMN05444395_10334 | SAMN05444395_10338 | SusD family protein. | Effector-binding domain-containing protein. | 0.751 |
SHN63640.1 | SHN65042.1 | SAMN05444395_10334 | SAMN05444395_103188 | SusD family protein. | Undecaprenyl-diphosphatase. | 0.728 |
SHN63640.1 | SHN71477.1 | SAMN05444395_10334 | SAMN05444395_106173 | SusD family protein. | Predicted naringenin-chalcone synthase. | 0.681 |
SHN63640.1 | atpD | SAMN05444395_10334 | SAMN05444395_101287 | SusD family protein. | ATP synthase F1 subcomplex beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | 0.626 |
SHN63640.1 | atpE | SAMN05444395_10334 | SAMN05444395_101499 | SusD family protein. | ATP synthase F0 subcomplex C subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. | 0.999 |
SHN63656.1 | SHN63630.1 | SAMN05444395_10335 | SAMN05444395_10333 | Repeat domain-containing protein. | Iron complex outermembrane recepter protein. | 0.805 |
SHN63656.1 | SHN63640.1 | SAMN05444395_10335 | SAMN05444395_10334 | Repeat domain-containing protein. | SusD family protein. | 0.866 |
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