STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN67906.1Sulfate permease, SulP family. (530 aa)    
Predicted Functional Partners:
SHN51213.1
NADH dehydrogenase subunit M.
  
 
 0.798
SHN77335.1
Calcineurin-like phosphoesterase.
  
   0.762
sbcD
Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
   
   0.731
SHN51178.1
Hypothetical protein.
    
   0.696
SHN61246.1
Por secretion system C-terminal sorting domain-containing protein.
    
   0.696
SHN70137.1
Glycine dehydrogenase; Belongs to the GcvP family.
    
  0.685
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
   0.672
SHN71462.1
Acyl carrier protein.
    
   0.672
SHN60071.1
Short chain dehydrogenase.
    
   0.541
SHN61140.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
    
   0.541
Your Current Organism:
Flavobacterium fryxellicola
NCBI taxonomy Id: 249352
Other names: CIP 108325, DSM 16209, F. fryxellicola, Flavobacterium fryxellicola Van Trappen et al. 2005 emend. Hahnke et al. 2016, LMG 22022, LMG:22022
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