STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN74089.1Tetratricopeptide repeat-containing protein. (1004 aa)    
Predicted Functional Partners:
SHN74077.1
Hypothetical protein.
 
   
 0.909
SHN75882.1
WD40-like Beta Propeller Repeat.
 
 
 0.865
SHN70417.1
WD40-like Beta Propeller Repeat.
 
 
 0.855
SHN75875.1
Hypothetical protein.
 
 
 0.804
SHN53240.1
Protein involved in gliding motility SprE.
 
  
 0.767
SHN70303.1
Outer membrane transport energization protein TonB.
 
     0.764
SHN66965.1
CarboxypepD_reg-like domain-containing protein.
  
     0.735
SHN57955.1
Family of unknown function.
 
     0.724
SHN65664.1
Protein involved in gliding motility GldM.
  
     0.713
SHN49816.1
Surface antigen.
 
    0.707
Your Current Organism:
Flavobacterium fryxellicola
NCBI taxonomy Id: 249352
Other names: CIP 108325, DSM 16209, F. fryxellicola, Flavobacterium fryxellicola Van Trappen et al. 2005 emend. Hahnke et al. 2016, LMG 22022, LMG:22022
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.