STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN79429.1Type I restriction enzyme R protein N terminus (HSDR_N). (149 aa)    
Predicted Functional Partners:
SHN79434.1
Hypothetical protein.
 
     0.885
SHN79424.1
DNA polymerase III, delta subunit.
 
     0.845
SHN72805.1
RNA polymerase Rpb6.
  
     0.766
SHN72085.1
Type I restriction enzyme, S subunit.
  
 
 0.691
SHN76954.1
Type I restriction enzyme, S subunit.
  
 
 0.691
SHN77303.1
Type I restriction enzyme, S subunit.
  
 
 0.691
SHN55305.1
uroporphyrinogen-III synthase.
  
     0.675
SHN61650.1
Protein of unknown function.
  
     0.670
SHN51399.1
Hypothetical protein.
  
 
 0.657
SHN72079.1
Type I restriction enzyme M protein.
  
 
 0.657
Your Current Organism:
Flavobacterium fryxellicola
NCBI taxonomy Id: 249352
Other names: CIP 108325, DSM 16209, F. fryxellicola, Flavobacterium fryxellicola Van Trappen et al. 2005 emend. Hahnke et al. 2016, LMG 22022, LMG:22022
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.