STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN79623.1Hypothetical protein. (246 aa)    
Predicted Functional Partners:
SHN76821.1
RagB/SusD domain-containing protein.
  
     0.773
SHN79637.1
RagB/SusD domain-containing protein.
  
     0.773
SHN79641.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.773
SHN76826.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.772
SHN75092.1
RteC protein.
  
     0.662
SHN76915.1
Hypothetical protein.
  
     0.632
SHN75110.1
Hypothetical protein.
  
     0.630
SHN76879.1
RteC protein.
  
     0.565
SHN79609.1
Iron complex outermembrane recepter protein.
 
     0.521
SHN76894.1
AraC-type DNA-binding protein.
  
     0.504
Your Current Organism:
Flavobacterium fryxellicola
NCBI taxonomy Id: 249352
Other names: CIP 108325, DSM 16209, F. fryxellicola, Flavobacterium fryxellicola Van Trappen et al. 2005 emend. Hahnke et al. 2016, LMG 22022, LMG:22022
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.