STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHN79647.1Hypothetical protein. (115 aa)    
Predicted Functional Partners:
SHN59955.1
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
    
 0.618
SHN61330.1
Predicted ABC-type ATPase.
    
 
 0.577
SHN70858.1
Predicted ABC-type ATPase.
    
 
 0.577
SHN75256.1
Serine/threonine-protein kinase HipA.
   
   0.525
SHN75262.1
Serine/threonine-protein kinase HipA.
   
   0.525
SHN77098.1
Serine/threonine-protein kinase HipA.
   
   0.525
SHN77105.1
Serine/threonine-protein kinase HipA.
   
   0.525
SHN78066.1
Nicotinamide-nucleotide adenylyltransferase, NadR type.
   
 
  0.455
murB
UDP-N-acetylmuramate dehydrogenase; Cell wall formation.
    
  0.442
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
  0.440
Your Current Organism:
Flavobacterium fryxellicola
NCBI taxonomy Id: 249352
Other names: CIP 108325, DSM 16209, F. fryxellicola, Flavobacterium fryxellicola Van Trappen et al. 2005 emend. Hahnke et al. 2016, LMG 22022, LMG:22022
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.