STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OLV19436.1Transcriptional regulator, AraC family. (151 aa)    
Predicted Functional Partners:
OLV19435.1
Lyase.
 
     0.946
OLV16767.1
Lyase.
 
    0.834
OLV15525.1
DNA-binding response regulator, AraC family.
  
   0.763
rpoA
DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.714
OLV16147.1
DNA-binding response regulator, AraC family.
  
     0.712
OLV20273.1
Glutamate synthase [NADPH] large chain.
    
  0.687
OLV19434.1
Hypothetical protein.
       0.636
OLV19437.1
Antibiotic efflux protein.
       0.499
OLV18557.1
Lyase.
  
     0.427
OLV19433.1
Hypothetical protein.
       0.422
Your Current Organism:
Deinococcus marmoris
NCBI taxonomy Id: 249408
Other names: D. marmoris, DSM 12784, Deinococcus marmoris Hirsch et al. 2006, Deinococcus sp. AA63, Deinococcus sp. AA69, Deinococcus sp. KOPRI26562, NRRL B-41042, strain AA-63
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.