STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OLV18316.1Sulfur acceptor protein SufE for iron-sulfur cluster assembly. (153 aa)    
Predicted Functional Partners:
OLV19186.1
Cysteine desulfurase.
  
 0.920
OLV18348.1
Cysteine desulfurase.
  
 0.920
OLV16923.1
Cysteine desulfurase.
  
 0.920
OLV15998.1
Cysteine desulfurase.
  
 0.920
OLV18317.1
Thiosulfate sulfurtransferase, rhodanese.
 
     0.831
OLV17213.1
Iron-sulfur cluster assembly ATPase protein SufC.
  
   0.632
OLV17208.1
Iron-sulfur cluster assembly protein SufD.
  
 
 0.483
OLV17212.1
Iron-sulfur cluster assembly protein SufB.
  
 
 0.483
OLV17896.1
Hypothetical protein.
 
     0.467
OLV18318.1
Hypothetical protein.
       0.458
Your Current Organism:
Deinococcus marmoris
NCBI taxonomy Id: 249408
Other names: D. marmoris, DSM 12784, Deinococcus marmoris Hirsch et al. 2006, Deinococcus sp. AA63, Deinococcus sp. AA69, Deinococcus sp. KOPRI26562, NRRL B-41042, strain AA-63
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