STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OLV17390.1Hypothetical protein. (568 aa)    
Predicted Functional Partners:
OLV17392.1
Hypothetical protein; Belongs to the glycosyl hydrolase 26 family.
 
     0.794
OLV17393.1
Bacteriophage N4 adsorption protein B.
 
    0.782
OLV15857.1
TPR repeat.
 
    0.748
OLV20253.1
Fibronectin type III domain protein.
  
     0.708
OLV19649.1
Transcriptional activator domain.
  
     0.602
OLV19197.1
Iron ABC transporter, periplasmic substrate-binding protein.
  
     0.541
OLV18236.1
Extracellular Matrix protein PelA.
  
     0.512
OLV15724.1
Conjugative transfer ATPase.
  
     0.489
OLV19159.1
Transcriptional regulator.
  
     0.471
OLV20252.1
Serine protease, subtilase family.
  
     0.470
Your Current Organism:
Deinococcus marmoris
NCBI taxonomy Id: 249408
Other names: D. marmoris, DSM 12784, Deinococcus marmoris Hirsch et al. 2006, Deinococcus sp. AA63, Deinococcus sp. AA69, Deinococcus sp. KOPRI26562, NRRL B-41042, strain AA-63
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