STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OLV16155.1Retinol dehydrogenase 13; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (306 aa)    
Predicted Functional Partners:
OLV20273.1
Glutamate synthase [NADPH] large chain.
     
 0.769
OLV20329.1
Transporter.
  
 0.599
OLV17471.1
Aldehyde dehydrogenase, PaaZ.
  
 0.572
OLV19977.1
Enoyl-CoA hydratase / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase.
  
 0.532
OLV17355.1
Enoyl-CoA hydratase [isoleucine degradation] / 3-hydroxyacyl-CoA dehydrogenase.
  
 0.532
OLV16154.1
Transcriptional regulator, TetR family.
       0.532
OLV19568.1
Malonyl CoA-acyl carrier protein transacylase.
   
 0.501
OLV16034.1
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A and B; Belongs to the 3-oxoacid CoA-transferase family.
  
 0.500
OLV18490.1
Choline-sulfatase.
   
   0.495
OLV17403.1
Hypothetical protein.
   
   0.495
Your Current Organism:
Deinococcus marmoris
NCBI taxonomy Id: 249408
Other names: D. marmoris, DSM 12784, Deinococcus marmoris Hirsch et al. 2006, Deinococcus sp. AA63, Deinococcus sp. AA69, Deinococcus sp. KOPRI26562, NRRL B-41042, strain AA-63
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