STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gll3395ORF_ID:gll3395; similar to Xaa-Pro dipeptidase. (233 aa)    
Predicted Functional Partners:
gll3396
ORF_ID:gll3396; similar to Xaa-Pro dipeptidase.
     0.994
glr3066
Histidine ammonia-lyase; ORF_ID:glr3066; Belongs to the PAL/histidase family.
  
  
 0.758
glr0243
ORF_ID:glr0243; hypothetical protein.
 
     0.706
gll3171
ORF_ID:gll3171; unknown protein.
  
     0.704
glr4054
ORF_ID:glr4054; probable amidase.
 
     0.531
gll4423
ORF_ID:gll4423; hypothetical protein.
  
   
 0.520
gsr3397
ORF_ID:gsr3397; unknown protein.
       0.485
gsr3398
ORF_ID:gsr3398; unknown protein.
       0.485
gsr3399
ORF_ID:gsr3399; unknown protein.
       0.485
gll4258
ORF_ID:gll4258; hypothetical protein.
  
     0.443
Your Current Organism:
Gloeobacter violaceus
NCBI taxonomy Id: 251221
Other names: G. violaceus PCC 7421, Gloeobacter violaceus ATCC 29082, Gloeobacter violaceus PCC 7421, Gloeobacter violaceus str. PCC 7421, Gloeobacter violaceus strain PCC 7421
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.