STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glr4398ORF_ID:glr4398; hypothetical protein. (262 aa)    
Predicted Functional Partners:
glr4399
Rod shape-determining protein; ORF_ID:glr4399.
 
 
 0.953
gll2229
Cell-shape determining protein; ORF_ID:gll2229.
  
 
 0.891
glr1467
ORF_ID:glr1467; cell-shape determining protein MreB homolog.
  
 
 0.887
glr4400
ORF_ID:glr4400; similar to rod shape-determining protein MreC.
 
 
 
 0.831
rpl23
50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.
    
 
 0.829
rpl29
50S ribosomal protein L29; ORF_ID:gsl3919; Belongs to the universal ribosomal protein uL29 family.
    
   0.827
rpl22
50S ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).
    
   0.827
glr4397
Pseudouridine synthase; ORF_ID:glr4397; hypothetical protein; Belongs to the pseudouridine synthase RsuA family.
       0.799
glr0301
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; ORF_ID:glr0301; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
    0.794
glr4396
ORF_ID:glr4396; unknown protein.
       0.773
Your Current Organism:
Gloeobacter violaceus
NCBI taxonomy Id: 251221
Other names: G. violaceus PCC 7421, Gloeobacter violaceus ATCC 29082, Gloeobacter violaceus PCC 7421, Gloeobacter violaceus str. PCC 7421, Gloeobacter violaceus strain PCC 7421
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.