STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Chro_0116PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase; InterPro IPR003439:IPR013563:IPR003593:IPR017871; KEGG: ana:alr1552 ATP-binding protein of ABC transporter; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; SPTR: ATP-binding protein of ABC transporter; Belongs to the ABC transporter superfamily. (599 aa)    
Predicted Functional Partners:
Chro_0682
PFAM: Binding-protein-dependent transport system inner membrane component; COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515:IPR000633; KEGG: npu:Npun_R0669 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component.
 
 0.998
Chro_3350
PFAM: Binding-protein-dependent transport system inner membrane component; COGs: COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: cyt:cce_3651 peptide transport system permease protein; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: ABC transporter, permease protein.
 
 0.998
Chro_5154
PFAM: Binding-protein-dependent transport system inner membrane component; COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: cyh:Cyan8802_0365 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: ABC transporter, permease protein, putative.
 
 0.992
Chro_1991
PFAM: Binding-protein-dependent transport system inner membrane component; COGs: COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems permease components; InterPro IPR000515; KEGG: npu:Npun_R0883 binding-protein-dependent transport systems inner membrane component; PFAM: binding-protein-dependent transport systems inner membrane component; SPTR: Binding-protein-dependent transport systems inner membrane component.
 
 0.990
Chro_1649
PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle; COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR000914; KEGG: ana:alr0140 periplasmic oligopeptide-binding protein of oligopeptide ABC transporter; PFAM: extracellular solute-binding protein family 5; SPTR: Bacterial extracellular solute-binding protein, family 5.
 
 
 0.977
Chro_1876
PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle; COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR000914; KEGG: ana:alr3884 periplasmic oligopeptide-binding protein of oligopeptide ABC transporter; PFAM: extracellular solute-binding protein family 5; SPTR: Bacterial extracellular solute-binding protein, family 5.
 
 
 0.974
Chro_1877
PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle; COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR000914; KEGG: ana:alr3884 periplasmic oligopeptide-binding protein of oligopeptide ABC transporter; PFAM: extracellular solute-binding protein family 5; SPTR: Periplasmic oligopeptide-binding protein of oligopeptide ABC transporter.
 
 
 0.970
Chro_1878
PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle; COGs: COG0747 ABC-type dipeptide transport system periplasmic component; InterPro IPR000914; KEGG: ana:alr3884 periplasmic oligopeptide-binding protein of oligopeptide ABC transporter; PFAM: extracellular solute-binding protein family 5; SPTR: Periplasmic oligopeptide-binding protein of oligopeptide ABC transporter.
 
 
 0.970
Chro_3369
PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; COGs: COG1123 ATPase components of various ABC-type transport systems contain duplicated ATPase; InterPro IPR017871:IPR003439:IPR013563:IPR003593; KEGG: ava:Ava_2045 ABC transporter-like; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; SPTR: ABC transporter-like; Belongs to the ABC transporter superfamily.
  
  
 
0.911
Chro_1696
PFAM: Cobalt transport protein; COGs: COG0619 ABC-type cobalt transport system permease component CbiQ and related transporter; InterPro IPR003339; KEGG: npu:Npun_R1701 cobalt transport protein; PFAM: cobalt transport protein; SPTR: Cobalt transport protein.
  
 
 0.828
Your Current Organism:
Chroococcidiopsis thermalis
NCBI taxonomy Id: 251229
Other names: C. thermalis PCC 7203, Chroococcidiopsis sp. ATCC 27900, Chroococcidiopsis sp. PCC 7203, Chroococcidiopsis thermalis PCC 7203, Chroococcidiopsis thermalis str. PCC 7203
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