STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Chro_0236PFAM: Glycosyl transferase family 2; COGs: COG1215 Glycosyltransferase probably involved in cell wall biogenesis; InterPro IPR001173; KEGG: ava:Ava_1123 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: Glycosyl transferase, family 2. (318 aa)    
Predicted Functional Partners:
Chro_0237
Hypothetical protein; PFAM: O-Antigen ligase; KEGG: ana:alr2841 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.884
Chro_0235
PFAM: Glycosyl transferase family 2; COGs: COG1216 glycosyltransferase; InterPro IPR001173; KEGG: npu:Npun_R1065 glycosyl transferase family protein; PFAM: glycosyl transferase family 2; SPTR: Glycosyltransferase.
 
    0.792
Chro_0231
PFAM: Glycosyl transferases group 1; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: ava:Ava_3572 glycosyl transferase, group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase, group 1.
  
     0.700
Chro_0234
KEGG: naz:Aazo_3121 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.642
Chro_2301
PFAM: Glycosyl transferases group 1; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: npu:Npun_F2954 glycosyl transferase, group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase, group 1.
  
     0.616
Chro_0233
PFAM: Polysaccharide biosynthesis protein; COGs: COG2244 Membrane protein involved in the export of O-antigen and teichoic acid; InterPro IPR002797; KEGG: pjd:Pjdr2_1229 polysaccharide biosynthesis protein; PFAM: polysaccharide biosynthesis protein; SPTR: Polysaccharide biosynthesis protein.
 
  
 0.510
Chro_2300
Capsular exopolysaccharide family; PFAM: Chain length determinant protein; CobQ/CobB/MinD/ParA nucleotide binding domain; TIGRFAM: capsular exopolysaccharide family; COGs: COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis; InterPro IPR005702:IPR003856; KEGG: npu:Npun_R1070 lipopolysaccharide biosynthesis protein; PFAM: lipopolysaccharide biosynthesis protein; PRIAM: Non-specific protein-tyrosine kinase; SPTR: Lipopolysaccharide biosynthesis protein; TIGRFAM: capsular exopolysaccharide family.
 
  
 0.455
Chro_2686
Periplasmic sensor diguanylate cyclase/phosphodiesterase; PFAM: EAL domain; GGDEF domain; CHASE4 domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain; COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain; InterProIPR000014:IPR000700:IPR001633:IPR000160:IPR 001610:IPR000215:IPR007892:IPR013767; KEGG: ppd:Ppro_2997 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); PFAM: EAL domain protein; GGDEF domain containing protein; CHASE4 domain protein; PAS fold domain protein; SMART: EAL domain protein; GG [...]
  
  
 0.447
Chro_4347
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PFAM: EAL domain; HAMP domain; GGDEF domain; CHASE4 domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain; COGs: COG2200 FOG: EAL domain; InterProIPR000014:IPR000700:IPR001633:IPR003660:IPR 000160:IPR001610:IPR007892:IPR013656; KEGG: npu:Npun_F5467 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); PFAM: EAL domain protein; GGDEF domain containing protein; CHASE4 domain protein; histidine kinase HAMP region domain protein; PAS fold-4 domain protein; SMART: EAL domain protein; GGDE [...]
  
  
 0.447
Chro_0368
PFAM: Domain of unknown function DUF11; TIGRFAM: conserved repeat domain; InterPro IPR001434; KEGG: npu:Npun_F0772 hypothetical protein; PFAM: protein of unknown function DUF11; SPTR: Conserved repeat domain protein; TIGRFAM: conserved repeat domain protein.
  
     0.442
Your Current Organism:
Chroococcidiopsis thermalis
NCBI taxonomy Id: 251229
Other names: C. thermalis PCC 7203, Chroococcidiopsis sp. ATCC 27900, Chroococcidiopsis sp. PCC 7203, Chroococcidiopsis thermalis PCC 7203, Chroococcidiopsis thermalis str. PCC 7203
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