STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Chro_0775Protein of unknown function UPF0074; PFAM: Transcriptional regulator; InterPro IPR000944; KEGG: aco:Amico_1688 transcriptional regulator, IclR family; PFAM: protein of unknown function UPF0074; SPTR: Putative uncharacterized protein. (116 aa)    
Predicted Functional Partners:
Chro_4586
Modular FeS cluster scaffolding protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
  
 0.765
Chro_0154
Cysteine desulfurase; PFAM: Aminotransferase class-V; COGs: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; InterPro IPR000192:IPR020578:IPR016454; KEGG: ava:Ava_0437 aromatic amino acid beta-eliminating lyase/threonine aldolase; PFAM: aminotransferase class V; PRIAM: Cysteine desulfurase; SPTR: Aromatic amino acid beta-eliminating lyase/threonine aldolase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
  
  
 0.499
Chro_3394
Cysteine desulfurase; PFAM: Aminotransferase class-V; COGs: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; InterPro IPR020578:IPR000192:IPR016454; KEGG: ana:alr3088 class-V aminotransferase; PFAM: aminotransferase class V; PRIAM: Cysteine desulfurase; SPTR: Class-V aminotransferase.
  
  
 0.499
Chro_4587
Cysteine desulfurase NifS; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
  
  
 0.499
Chro_1293
PFAM: NifU-like N terminal domain; TIGRFAM: SUF system FeS assembly protein, NifU family; COGs: COG0822 NifU homolog involved in Fe-S cluster formation; InterPro IPR002871:IPR011341; KEGG: cyn:Cyan7425_4473 SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; SPTR: SUF system FeS assembly protein, NifU family; TIGRFAM: SUF system FeS assembly protein, NifU family.
  
  
 0.425
Your Current Organism:
Chroococcidiopsis thermalis
NCBI taxonomy Id: 251229
Other names: C. thermalis PCC 7203, Chroococcidiopsis sp. ATCC 27900, Chroococcidiopsis sp. PCC 7203, Chroococcidiopsis thermalis PCC 7203, Chroococcidiopsis thermalis str. PCC 7203
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