STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Chro_0843DNA polymerase beta domain protein region; PFAM: Nucleotidyltransferase domain; InterPro IPR002934; KEGG: rrs:RoseRS_3842 DNA polymerase beta subunit; PFAM: DNA polymerase beta domain protein region; SPTR: DNA polymerase, beta domain protein region. (124 aa)    
Predicted Functional Partners:
Chro_3779
PilT protein domain protein; PFAM: PIN domain; COGs: COG1487 nucleic acid-binding protein contains PIN domain; InterPro IPR002716; KEGG: hau:Haur_5182 PilT domain-containing protein; PFAM: PilT protein domain protein; SPTR: Putative uncharacterized protein.
 
     0.578
Chro_3591
PilT protein domain protein; PFAM: PIN domain; COGs: COG1487 nucleic acid-binding protein contains PIN domain; InterPro IPR002716; KEGG: hau:Haur_5182 PilT domain-containing protein; PFAM: PilT protein domain protein; SPTR: Putative uncharacterized protein.
 
     0.536
Chro_4809
KEGG: syn:slr2118 hypothetical protein; SPTR: Slr2118 protein.
  
     0.504
Chro_0868
PBS lyase HEAT domain protein repeat-containing protein; PFAM: Armadillo/beta-catenin-like repeat; PBS lyase HEAT-like repeat; HEAT repeat; COGs: COG1413 FOG: HEAT repeat; InterPro IPR004155:IPR000225:IPR000357; KEGG: ava:Ava_4073 heat repeat-containing PBS lyase; PFAM: PBS lyase HEAT domain protein repeat-containing protein; HEAT domain containing protein; SPTR: PBS lyase HEAT-like repeat.
 
     0.501
Chro_0844
Hypothetical protein.
       0.496
Chro_1393
SMC domain protein; PFAM: RecF/RecN/SMC N terminal domain; COGs: COG4637 ATPase; InterPro IPR003395:IPR014555; KEGG: dhd:Dhaf_0103 SMC domain protein; PFAM: SMC domain protein; SPTR: RecF/RecN/SMC N terminal domain, putative.
 
   
 0.427
Chro_1327
PFAM: Protein of unknown function (DUF820); COGs: COG4636 conserved hypothetical protein; InterPro IPR008538; KEGG: gvi:glr2971 hypothetical protein; PFAM: protein of unknown function DUF820; SPTR: Putative uncharacterized protein.
  
     0.425
Chro_1189
Putative lipoprotein; PFAM: 2-phosphosulpholactate phosphatase; COGs: COG2045 Phosphosulfolactate phosphohydrolase; KEGG: npu:Npun_R4854 putative lipoprotein; SPTR: Putative lipoprotein; Belongs to the ComB family.
  
     0.404
Chro_4621
PFAM: Glycosyl transferases group 1; COGs: COG0438 Glycosyltransferase; InterPro IPR001296; KEGG: cyh:Cyan8802_1181 glycosyl transferase group 1; PFAM: glycosyl transferase group 1; SPTR: Glycosyl transferase group 1.
  
     0.402
Your Current Organism:
Chroococcidiopsis thermalis
NCBI taxonomy Id: 251229
Other names: C. thermalis PCC 7203, Chroococcidiopsis sp. ATCC 27900, Chroococcidiopsis sp. PCC 7203, Chroococcidiopsis thermalis PCC 7203, Chroococcidiopsis thermalis str. PCC 7203
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