STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Chro_1044PFAM: Peptidase S24-like; TIGRFAM: signal peptidase I, bacterial type; COGs: COG0681 Signal peptidase I; InterProIPR000223:IPR019759:IPR019756:IPR019757:IPR 019758; KEGG: ter:Tery_1310 thylakoidal processing peptidase; PFAM: Peptidase S24/S26A/S26B, conserved region; PRIAM: Signal peptidase I; SPTR: Signal peptidase I; TIGRFAM: signal peptidase I; Belongs to the peptidase S26 family. (204 aa)    
Predicted Functional Partners:
Chro_0068
GTP-binding protein LepA; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; GTP-binding protein LepA C-terminus; Elongation factor Tu GTP binding domain; TIGRFAM: GTP-binding protein LepA; small GTP-binding protein domain; COGs: COG0481 Membrane GTPase LepA; InterProIPR000795:IPR004161:IPR000640:IPR013842:IPR 006297:IPR005225; KEGG: ana:all2508 GTP-binding protein LepA; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain-containing protein; GTP-binding protein LepA domain protein; SPTR: GTP-binding protein lep [...]
 
 
 0.702
Chro_1498
YUP8H12 protein; PFAM: Peptidase family M50; TIGRFAM: RIP metalloprotease RseP; COGs: COG0750 membrane-associated Zn-dependent protease 1; InterPro IPR008915:IPR001478:IPR004387; KEGG: ava:Ava_1730 hypothetical protein; PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein; SPTR: RIP metalloprotease RseP; TIGRFAM: membrane-associated zinc metalloprotease.
 
  
 0.675
minE
Cell division topological specificity factor MinE; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.
  
    0.600
rnhB
RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
 
    0.588
hpf
SSU ribosomal protein S30P; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
  
    0.480
secF
Protein translocase subunit secF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecF subfamily.
 
  
 0.457
Chro_1973
KEGG: mem:Memar_0869 hypothetical protein; SPTR: Putative uncharacterized protein.
  
  
 0.426
rplY
LSU ribosomal protein L25P; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
 
  
 0.413
Chro_0451
HtrA2 peptidase; PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF); COGs: COG0265 Trypsin-like serine protease typically periplasmic contain C-terminal PDZ domain; InterPro IPR001478:IPR001254:IPR001940; KEGG: npu:Npun_R2556 peptidase S1 and S6, chymotrypsin/Hap; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; PRIAM: HtrA2 peptidase; SMART: PDZ/DHR/GLGF domain protein; SPTR: Peptidase S1 and S6, chymotrypsin/Hap.
 
   
 0.406
rpmF
PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32; InterPro IPR002677; KEGG: ana:asl3674 50S ribosomal protein L32; PFAM: ribosomal L32p protein; SPTR: 50S ribosomal protein L32; TIGRFAM: ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
  
    0.405
Your Current Organism:
Chroococcidiopsis thermalis
NCBI taxonomy Id: 251229
Other names: C. thermalis PCC 7203, Chroococcidiopsis sp. ATCC 27900, Chroococcidiopsis sp. PCC 7203, Chroococcidiopsis thermalis PCC 7203, Chroococcidiopsis thermalis str. PCC 7203
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