STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Chro_1047KEGG: npu:Npun_R0218 hypothetical protein; SPTR: Putative uncharacterized protein. (161 aa)    
Predicted Functional Partners:
Chro_5545
PFAM: UV-endonuclease UvdE; TIGRFAM: UV damage endonuclease UvdE; COGs: COG4294 UV damage repair endonuclease; InterPro IPR004601; KEGG: npu:Npun_F0223 putative UV damage endonuclease; PFAM: UV-endonuclease UvdE; SPTR: UV-endonuclease UvdE; TIGRFAM: UV-endonuclease UvdE.
  
     0.695
Chro_1793
PFAM: Uncharacterized conserved protein (DUF2267); COGs: COG5502 conserved hypothetical protein; KEGG: npu:Npun_R6240 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.626
Chro_4098
KEGG: ana:alr2489 hypothetical protein; SPTR: Alr2489 protein.
  
     0.578
Chro_2986
KEGG: ter:Tery_1665 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.533
Chro_2120
KEGG: ava:Ava_0421 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.489
Chro_3714
PFAM: ABC transporter transmembrane region; ABC transporter; COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterPro IPR001140:IPR003439:IPR003593:IPR017940; KEGG: ana:all2622 ATP-binding protein of ABC transporter; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: ATP-binding protein of ABC transporter.
  
     0.466
Chro_1785
PFAM: Cupin domain; InterPro IPR013096; KEGG: npu:Npun_R6234 cupin 2 domain-containing protein; PFAM: Cupin 2 conserved barrel domain protein; SPTR: Cupin 2, conserved barrel domain protein.
  
     0.451
Chro_3586
PFAM: Helix-turn-helix; InterPro IPR001387; KEGG: ava:Ava_4734 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Transcriptional regulator, XRE family.
  
     0.424
Chro_3243
PFAM: GAF domain; Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG5002 Signal transduction histidine kinase; InterProIPR003018:IPR013656:IPR013767:IPR013655:IPR 003661:IPR003594:IPR001789:IPR016132:IPR005467:IPR000014:I PR000700:IPR001610:IPR004358; KEGG: ava:Ava_2420 PAS/PAC sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; PAS fold-4 domain protein; PAS fold domain protein [...]
  
     0.418
Chro_4567
Helix-turn-helix domain protein; PFAM: Helix-turn-helix; InterPro IPR001387:IPR017896:IPR017900; KEGG: ava:Ava_4260 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Transcriptional regulator, XRE family.
  
     0.408
Your Current Organism:
Chroococcidiopsis thermalis
NCBI taxonomy Id: 251229
Other names: C. thermalis PCC 7203, Chroococcidiopsis sp. ATCC 27900, Chroococcidiopsis sp. PCC 7203, Chroococcidiopsis thermalis PCC 7203, Chroococcidiopsis thermalis str. PCC 7203
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