STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Chro_1219PFAM: ATPase family associated with various cellular activities (AAA); Tetratricopeptide repeat; COGs: COG0464 ATPase of the AAA+ class; InterProIPR003959:IPR019734:IPR013026:IPR003960:IPR 003593; KEGG: ote:Oter_1429 ATPase central domain-containing protein; PFAM: AAA ATPase central domain protein; PRIAM: Microtubule-severing ATPase; SMART: AAA ATPase; Tetratricopeptide repeat; SPTR: AAA ATPase central domain protein. (466 aa)    
Predicted Functional Partners:
Chro_1003
Hypothetical protein; PFAM: Domain of unknown function (DUF1768); TIGRFAM: conserved hypothetical protein, ribA/ribD-fused; COGs: COG3236 conserved hypothetical protein; InterPro IPR012816; KEGG: naz:Aazo_3165 hypothetical protein; PFAM: Conserved hypothetical protein CHP02464; SPTR: Putative uncharacterized protein.
 
 
 
 0.889
Chro_0010
PFAM: Caspase domain; InterPro IPR011600:IPR011189; KEGG: ava:Ava_2381 peptidase C14, caspase catalytic subunit P20; PFAM: peptidase C14 caspase catalytic subunit p20; SPTR: Caspase domain protein.
   
 0.789
Chro_1220
InterPro IPR001440:IPR019734:IPR013026; KEGG: ote:Oter_1428 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SPTR: Tetratricopeptide TPR_2 repeat protein.
 
     0.765
Chro_0092
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
  
 
 0.739
Chro_5098
ATP-binding region ATPase domain protein; Molecular chaperone. Has ATPase activity.
  
 0.705
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
 
 
  0.685
Chro_2547
PFAM: Histone deacetylase domain; COGs: COG0123 Deacetylase including yeast histone deacetylase and acetoin utilization protein; InterPro IPR000286; KEGG: npu:Npun_R6092 histone deacetylase superfamily protein; PFAM: histone deacetylase superfamily; PRIAM: Histone deacetylase; SPTR: Histone deacetylase superfamily.
   
 0.673
Chro_2650
PFAM: Histone deacetylase domain; COGs: COG0123 Deacetylase including yeast histone deacetylase and acetoin utilization protein; InterPro IPR000286; KEGG: ana:all0839 hypothetical protein; PFAM: histone deacetylase superfamily; SPTR: All0839 protein.
   
 0.673
Chro_1779
PFAM: ABC transporter; ABC transporter transmembrane region 2; COGs: COG4178 ABC-type uncharacterized transport system permease and ATPase components; InterProIPR003439:IPR017940:IPR017871:IPR003593:IPR 010509; KEGG: tel:tll0223 ATP-binding protein of ABC transporter; PFAM: ABC transporter domain-containing protein; ABC transporter related; SMART: AAA ATPase; SPTR: ATP-binding protein of ABC transporter.
     
 0.663
Chro_4863
TIGRFAM: DNA polymerase III, delta' subunit; COGs: COG2812 DNA polymerase III gamma/tau subunits; InterPro IPR004622; KEGG: ava:Ava_1963 DNA polymerase III subunit delta'; SPTR: DNA polymerase III, delta prime subunit; TIGRFAM: DNA polymerase III, delta prime subunit.
   
  0.649
Your Current Organism:
Chroococcidiopsis thermalis
NCBI taxonomy Id: 251229
Other names: C. thermalis PCC 7203, Chroococcidiopsis sp. ATCC 27900, Chroococcidiopsis sp. PCC 7203, Chroococcidiopsis thermalis PCC 7203, Chroococcidiopsis thermalis str. PCC 7203
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