STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Chro_1237Putative transcriptional regulator, Crp/Fnr family with PAS/PAC sensor; PFAM: Bacterial regulatory proteins, crp family; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG0664 cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase; InterPro IPR013767:IPR001808:IPR000014:IPR012318; KEGG: ava:Ava_2491 Crp/FNR family transcriptional regulator; PFAM: regulatory protein Crp; PAS fold domain protein; SMART: regulatory protein Crp; PAS domain containing protein; SPTR: Transcriptional regulator; TIGRFAM: PAS sensor protein. (405 aa)    
Predicted Functional Partners:
Chro_1693
PFAM: Protein of unknown function (DUF3539); KEGG: ava:Ava_2898 hypothetical protein; SPTR: Asr0485 protein.
    
 
 0.577
Chro_1236
Alpha-glucosidase; PFAM: Glycosyl hydrolases family 31; COGs: COG1501 Alpha-glucosidase family 31 of glycosyl hydrolase; InterPro IPR000322; KEGG: ana:alr4773 alpha-glucosidase; PFAM: glycoside hydrolase family 31; PRIAM: Alpha-glucosidase; SPTR: Alpha-glucosidase; Belongs to the glycosyl hydrolase 31 family.
 
     0.551
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.539
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.524
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.449
Chro_1238
KEGG: cyn:Cyan7425_2701 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.425
Chro_3243
PFAM: GAF domain; Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box; COGs: COG5002 Signal transduction histidine kinase; InterProIPR003018:IPR013656:IPR013767:IPR013655:IPR 003661:IPR003594:IPR001789:IPR016132:IPR005467:IPR000014:I PR000700:IPR001610:IPR004358; KEGG: ava:Ava_2420 PAS/PAC sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; GAF domain protein; PAS fold-4 domain protein; PAS fold domain protein [...]
 
 
 
 0.416
Your Current Organism:
Chroococcidiopsis thermalis
NCBI taxonomy Id: 251229
Other names: C. thermalis PCC 7203, Chroococcidiopsis sp. ATCC 27900, Chroococcidiopsis sp. PCC 7203, Chroococcidiopsis thermalis PCC 7203, Chroococcidiopsis thermalis str. PCC 7203
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