STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Chro_1393SMC domain protein; PFAM: RecF/RecN/SMC N terminal domain; COGs: COG4637 ATPase; InterPro IPR003395:IPR014555; KEGG: dhd:Dhaf_0103 SMC domain protein; PFAM: SMC domain protein; SPTR: RecF/RecN/SMC N terminal domain, putative. (395 aa)    
Predicted Functional Partners:
Chro_1394
KEGG: naz:Aazo_1510 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.789
Chro_3332
Restriction endonuclease; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain; Restriction endonuclease; COGs: COG1192 ATPase involved in chromosome partitioning; KEGG: cyh:Cyan8802_0367 restriction endonuclease; SPTR: Putative uncharacterized protein.
  
     0.610
Chro_1392
Protein of unknown function DUF6 transmembrane; PFAM: EamA-like transporter family; InterPro IPR000620; KEGG: sfu:Sfum_0926 hypothetical protein; PFAM: protein of unknown function DUF6 transmembrane; SPTR: Putative uncharacterized protein.
       0.536
Chro_4717
ATPase-like protein; COGs: COG1106 ATPase; KEGG: ter:Tery_4266 ATPase-like protein; SPTR: ATPase-like protein.
 
     0.512
mutS
DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.
       0.490
Chro_0843
DNA polymerase beta domain protein region; PFAM: Nucleotidyltransferase domain; InterPro IPR002934; KEGG: rrs:RoseRS_3842 DNA polymerase beta subunit; PFAM: DNA polymerase beta domain protein region; SPTR: DNA polymerase, beta domain protein region.
 
   
 0.427
Chro_5414
PFAM: Uncharacterised protein family (UPF0175); KEGG: ava:Ava_3500 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.427
Chro_0863
Transposase, IS4 family; PFAM: Transposase DDE domain; InterPro IPR002559; KEGG: amr:AM1_6242 IS4 family transposase; PFAM: transposase IS4 family protein; SPTR: Transposase, IS4 family protein.
  
     0.413
Chro_1170
Transposase, IS4 family; PFAM: Transposase DDE domain; InterPro IPR002559; KEGG: amr:AM1_6242 IS4 family transposase; PFAM: transposase IS4 family protein; SPTR: Transposase, IS4 family protein.
  
     0.413
Chro_2577
Transposase, IS4 family; PFAM: Transposase DDE domain; InterPro IPR002559; KEGG: amr:AM1_6242 IS4 family transposase; PFAM: transposase IS4 family protein; SPTR: Transposase, IS4 family protein.
  
     0.413
Your Current Organism:
Chroococcidiopsis thermalis
NCBI taxonomy Id: 251229
Other names: C. thermalis PCC 7203, Chroococcidiopsis sp. ATCC 27900, Chroococcidiopsis sp. PCC 7203, Chroococcidiopsis thermalis PCC 7203, Chroococcidiopsis thermalis str. PCC 7203
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