STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Chro_1524Hypothetical protein; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; InterPro IPR012902:IPR001120; KEGG: syp:SYNPCC7002_A1602 hypothetical protein; SPTR: Putative uncharacterized protein. (193 aa)    
Predicted Functional Partners:
Chro_1525
Hypothetical protein; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; InterPro IPR012902:IPR001120; KEGG: amr:AM1_5963 hypothetical protein; SPTR: Putative uncharacterized protein.
  
 
 0.926
Chro_1523
Hypothetical protein; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; InterPro IPR012902; KEGG: amr:AM1_A0103 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.773
Chro_1720
PFAM: Bacterial type II secretion system protein F domain; COGs: COG1459 Type II secretory pathway component PulF; InterPro IPR001992:IPR003004:IPR018076; KEGG: ava:Ava_0374 type II secretion system protein; PFAM: Type II secretion system F domain; SPTR: Type II secretion system protein.
 
  
 0.678
Chro_1722
PFAM: Type II/IV secretion system protein; GSPII_E N-terminal domain; COGs: COG2804 Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterPro IPR003593:IPR007831:IPR001482; KEGG: ana:all2444 general secretion pathway protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; SPTR: GSPII_E N-terminal domain family.
 
 
 0.549
Chro_3429
KEGG: ana:alr1030 hypothetical protein; SPTR: Alr1030 protein.
 
  
 0.525
Chro_4941
PFAM: Competence protein; TIGRFAM: ComEC/Rec2-related protein; COGs: COG0658 membrane metal-binding protein; InterPro IPR004477; KEGG: npu:Npun_R1641 ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; SPTR: ComEC/Rec2-related protein; TIGRFAM: ComEC/Rec2-related protein.
  
  
 0.516
Chro_3180
PFAM: Type II/IV secretion system protein; COGs: COG2804 Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterPro IPR001482:IPR003593; KEGG: gvi:gll0921 general secretion pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase; SPTR: General secretion pathway protein E.
  
 
 0.486
Chro_4875
PFAM: GSPII_E N-terminal domain; InterPro IPR007831; KEGG: npu:Npun_F2747 hypothetical protein; PFAM: General secretory system II protein E domain protein; SPTR: Putative uncharacterized protein.
  
 
 0.486
Chro_0436
Type 4 prepilin peptidase 1; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.461
Chro_5250
PFAM: Protein of unknown function (DUF2862); KEGG: ana:asl4482 hypothetical protein; SPTR: Asl4482 protein.
  
     0.460
Your Current Organism:
Chroococcidiopsis thermalis
NCBI taxonomy Id: 251229
Other names: C. thermalis PCC 7203, Chroococcidiopsis sp. ATCC 27900, Chroococcidiopsis sp. PCC 7203, Chroococcidiopsis thermalis PCC 7203, Chroococcidiopsis thermalis str. PCC 7203
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