STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Chro_1643Heat shock protein DnaJ domain protein; PFAM: WD domain, G-beta repeat; DnaJ domain; Tetratricopeptide repeat; COGs: COG2319 FOG: WD40 repeat; InterProIPR019734:IPR001623:IPR019782:IPR013026:IPR 017986:IPR019775:IPR001680:IPR020472:IPR001440:IPR019781; KEGG: npu:Npun_F0151 heat shock protein DnaJ domain-containing protein; PFAM: heat shock protein DnaJ domain protein; Tetratricopeptide TPR_1 repeat-containing protein; WD40 repeat, subgroup; SMART: heat shock protein DnaJ domain protein; Tetratricopeptide repeat; WD-40 repeat-containing protein; SPTR: Heat shock protein DnaJ domain protein. (459 aa)    
Predicted Functional Partners:
Chro_4556
Tetratricopeptide TPR_1 repeat-containing protein; PFAM: Tetratricopeptide repeat; InterPro IPR019734:IPR013026:IPR001440; KEGG: amr:AM1_4591 TPR domain-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: Tetratricopeptide repeat domain protein.
 
 0.952
Chro_4160
Tetratricopeptide TPR_1 repeat-containing protein; PFAM: Tetratricopeptide repeat; COGs: COG0457 FOG: TPR repeat; InterPro IPR019734:IPR013026:IPR001440; KEGG: amr:AM1_G0032 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: TPR repeat protein.
0.950
Chro_3719
Amino acid adenylation domain protein; PFAM: Phosphopantetheine attachment site; AMP-binding enzyme; Condensation domain; TIGRFAM: amino acid adenylation domain; COGs: COG1020 Non-ribosomal peptide synthetase modules and related protein; InterProIPR006162:IPR020845:IPR010071:IPR000873:IPR 006163:IPR001242:IPR009081; KEGG: ava:Ava_C0009 amino acid adenylation; PFAM: condensation domain protein; AMP-dependent synthetase and ligase; phosphopantetheine-binding; SPTR: Amino acid adenylation; TIGRFAM: amino acid adenylation domain protein.
   
 
 0.940
Chro_2576
PFAM: Thioesterase domain; Phosphopantetheine attachment site; AMP-binding enzyme; COGs: COG3319 Thioesterase domains of type I polyketide synthase or non-ribosomal peptide synthetase; InterProIPR009081:IPR006162:IPR000873:IPR006163:IPR 001031; KEGG: npu:Npun_F3173 amino acid adenylation domain-containing protein; PFAM: Thioesterase; AMP-dependent synthetase and ligase; phosphopantetheine-binding; SPTR: Peptide synthetase.
   
 
 0.935
rplN
LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
  
 0.929
Chro_1094
Ras superfamily GTP-binding protein YlqF; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.
  
 0.925
rplM
LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 0.919
rplF
LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
  0.918
rplC
LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
   
 0.915
rplO
LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
   
 0.914
Your Current Organism:
Chroococcidiopsis thermalis
NCBI taxonomy Id: 251229
Other names: C. thermalis PCC 7203, Chroococcidiopsis sp. ATCC 27900, Chroococcidiopsis sp. PCC 7203, Chroococcidiopsis thermalis PCC 7203, Chroococcidiopsis thermalis str. PCC 7203
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