STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Chro_1681PFAM: Domain of unknown function DUF20; COGs: COG0628 permease; InterPro IPR002549; KEGG: npu:Npun_R3576 hypothetical protein; PFAM: protein of unknown function UPF0118; SPTR: Putative uncharacterized protein. (377 aa)    
Predicted Functional Partners:
Chro_2095
PFAM: Domain of unknown function DUF20; COGs: COG0628 permease; InterPro IPR002549; KEGG: ana:alr4938 hypothetical protein; PFAM: protein of unknown function UPF0118; SPTR: Alr4938 protein.
  
     0.760
Chro_4286
PFAM: Domain of unknown function DUF20; COGs: COG0628 permease; InterPro IPR002549; KEGG: ana:all3163 hypothetical protein; PFAM: protein of unknown function UPF0118; SPTR: All3163 protein.
  
     0.748
Chro_1680
PFAM: Domain of unknown function DUF20; COGs: COG0628 permease; InterPro IPR002549; KEGG: cyc:PCC7424_3031 protein of unknown function UPF0118; PFAM: protein of unknown function UPF0118; SPTR: Conserved domain protein, putative.
 
    
0.646
Chro_1682
Hypothetical protein; InterPro IPR020885; KEGG: naz:Aazo_3777 hypothetical protein; SPTR: Putative uncharacterized protein; Belongs to the UPF0367 family.
       0.528
Chro_1683
PFAM: ABC transporter; COGs: COG1122 ABC-type cobalt transport system ATPase component; InterPro IPR003439:IPR017871:IPR003593; KEGG: ana:all4546 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: ABC transporter ATP-binding protein.
       0.503
Chro_1684
PFAM: Protein of unknown function (DUF901); COGs: COG3688 RNA-binding protein containing a PIN domain; InterPro IPR010298; KEGG: ana:all4545 hypothetical protein; PFAM: protein of unknown function DUF901; SPTR: All4545 protein.
 
     0.435
Your Current Organism:
Chroococcidiopsis thermalis
NCBI taxonomy Id: 251229
Other names: C. thermalis PCC 7203, Chroococcidiopsis sp. ATCC 27900, Chroococcidiopsis sp. PCC 7203, Chroococcidiopsis thermalis PCC 7203, Chroococcidiopsis thermalis str. PCC 7203
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