STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Chro_2258PFAM: HNH endonuclease; COGs: COG1403 Restriction endonuclease; InterPro IPR002711:IPR003615; KEGG: npu:Npun_R5632 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease; SPTR: HNH endonuclease. (165 aa)    
Predicted Functional Partners:
Chro_3208
PFAM: Peptidase family M50; InterPro IPR008915; KEGG: ana:all3418 hypothetical protein; PFAM: peptidase M50; SPTR: All3418 protein.
  
     0.578
Chro_4078
PFAM: Peptidase family M50; InterPro IPR008915; KEGG: npu:Npun_F6063 peptidase M50; PFAM: peptidase M50; SPTR: Peptidase M50.
  
     0.538
Chro_2257
Phosphoesterase RecJ domain protein; PFAM: DHH family; COGs: COG0618 Exopolyphosphatase-related protein; InterPro IPR001667; KEGG: ava:Ava_2676 phosphoesterase, RecJ-like; PFAM: phosphoesterase RecJ domain protein; SPTR: Phosphoesterase, RecJ-like.
       0.480
Chro_2259
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
       0.453
Your Current Organism:
Chroococcidiopsis thermalis
NCBI taxonomy Id: 251229
Other names: C. thermalis PCC 7203, Chroococcidiopsis sp. ATCC 27900, Chroococcidiopsis sp. PCC 7203, Chroococcidiopsis thermalis PCC 7203, Chroococcidiopsis thermalis str. PCC 7203
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