STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Chro_2282General secretion pathway protein H; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; InterPro IPR000983:IPR012902; KEGG: npu:Npun_F0676 general secretion pathway protein H; SPTR: General secretion pathway protein H. (209 aa)    
Predicted Functional Partners:
Chro_2281
General secretion pathway protein H; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; COGs: COG4968 Tfp pilus assembly protein PilE; InterPro IPR001120:IPR012902; KEGG: naz:Aazo_4066 general secretion pathway protein H; SPTR: General secretion pathway protein H.
 
  
 
0.944
Chro_1720
PFAM: Bacterial type II secretion system protein F domain; COGs: COG1459 Type II secretory pathway component PulF; InterPro IPR001992:IPR003004:IPR018076; KEGG: ava:Ava_0374 type II secretion system protein; PFAM: Type II secretion system F domain; SPTR: Type II secretion system protein.
 
   
 0.664
Chro_1722
PFAM: Type II/IV secretion system protein; GSPII_E N-terminal domain; COGs: COG2804 Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterPro IPR003593:IPR007831:IPR001482; KEGG: ana:all2444 general secretion pathway protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; SPTR: GSPII_E N-terminal domain family.
 
   
 0.607
Chro_0436
Type 4 prepilin peptidase 1; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.600
Chro_1721
Twitching motility protein; PFAM: Type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT; COGs: COG2805 Tfp pilus assembly protein pilus retraction ATPase PilT; InterPro IPR001482:IPR003593:IPR006321; KEGG: cyn:Cyan7425_4696 twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; SPTR: Twitching motility protein; TIGRFAM: twitching motility protein.
 
   
 0.572
Chro_3189
Twitching motility protein; PFAM: Type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT; COGs: COG2805 Tfp pilus assembly protein pilus retraction ATPase PilT; InterPro IPR001482:IPR003593:IPR006321; KEGG: tel:tll0554 twitching mobility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase; SPTR: Twitching mobility protein; TIGRFAM: twitching motility protein.
 
   
 0.560
Chro_3180
PFAM: Type II/IV secretion system protein; COGs: COG2804 Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterPro IPR001482:IPR003593; KEGG: gvi:gll0921 general secretion pathway protein E; PFAM: type II secretion system protein E; SMART: AAA ATPase; SPTR: General secretion pathway protein E.
 
   
 0.551
Chro_3431
PFAM: Competence protein A; TIGRFAM: type IV pilus assembly protein PilM; COGs: COG4972 Tfp pilus assembly protein ATPase PilM; InterPro IPR005883; KEGG: ana:alr1028 hypothetical protein; SPTR: Alr1028 protein; TIGRFAM: type IV pilus assembly protein PilM.
 
   
 0.537
Chro_2283
Hypothetical protein; COGs: COG3914 O-linked N-acetylglucosamine transferase SPINDLY family; InterPro IPR010916; KEGG: cyc:PCC7424_0256 hypothetical protein; SPTR: TPR repeat.
       0.504
Chro_4405
PFAM: Domain of unknown function; domain; Pyruvate ferredoxin/flavodoxin oxidoreductase; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric; COGs: COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase alpha subunit; InterProIPR017896:IPR017900:IPR002880:IPR019752:IPR 019456:IPR011766:IPR011895; KEGG: cyc:PCC7424_1261 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate [...]
     
 0.422
Your Current Organism:
Chroococcidiopsis thermalis
NCBI taxonomy Id: 251229
Other names: C. thermalis PCC 7203, Chroococcidiopsis sp. ATCC 27900, Chroococcidiopsis sp. PCC 7203, Chroococcidiopsis thermalis PCC 7203, Chroococcidiopsis thermalis str. PCC 7203
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