STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Chro_2449Transcriptional regulator, AraC family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018062:IPR020449:IPR018060:IPR000005; KEGG: cyn:Cyan7425_2438 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family. (322 aa)    
Predicted Functional Partners:
Chro_3302
Transcriptional regulator, AraC family; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR018062:IPR000005:IPR018060; KEGG: ava:Ava_1138 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator.
  
     0.755
Chro_2450
PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; Localisation of periplasmic protein complexes; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910:IPR000531; KEGG: ana:alr2581 hypothetical protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: Alr2581 protein.
 
     0.660
Chro_1043
Transcriptional regulator, AraC family; PFAM: AraC-like ligand binding domain; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR020449:IPR000005:IPR018060; KEGG: cpi:Cpin_0129 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional regulator, AraC family.
  
     0.539
Chro_3927
PFAM: AraC-type transcriptional regulator N-terminus; COGs: COG2207 AraC-type DNA-binding domain-containing protein; InterPro IPR009594:IPR000005:IPR018060; KEGG: cyt:cce_5088 AraC family transcriptional regulator; PFAM: AraC-type transcriptional regulator domain protein; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: Transcriptional Regulator, AraC family.
  
   0.525
Chro_2451
PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; Localisation of periplasmic protein complexes; TIGRFAM: TonB-dependent siderophore receptor; COGs: COG4774 Outer membrane receptor for monomeric catechols; InterPro IPR010105:IPR012910:IPR000531; KEGG: ana:all1101 ferrichrome iron receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: Ferrichrome iron receptor; TIGRFAM: TonB-dependent siderophore receptor.
 
     0.507
Chro_3646
PFAM: ABC transporter transmembrane region; ABC transporter; COGs: COG1132 ABC-type multidrug transport system ATPase and permease components; InterProIPR017871:IPR001140:IPR003439:IPR003593:IPR 017940; KEGG: gvi:gll0322 HlyB/MsbA family ABC transporter; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: Probable ABC transporter, ATP-binding/permease protein.
  
    0.440
Chro_3648
PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; Localisation of periplasmic protein complexes; COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR010917:IPR012910:IPR000531; KEGG: ana:all4026 hypothetical protein; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: All4026 protein.
  
     0.422
Your Current Organism:
Chroococcidiopsis thermalis
NCBI taxonomy Id: 251229
Other names: C. thermalis PCC 7203, Chroococcidiopsis sp. ATCC 27900, Chroococcidiopsis sp. PCC 7203, Chroococcidiopsis thermalis PCC 7203, Chroococcidiopsis thermalis str. PCC 7203
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