STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Chro_2503PFAM: Radical SAM superfamily; B12 binding domain; COGs: COG1032 Fe-S oxidoreductase; InterPro IPR006638:IPR006158:IPR007197; KEGG: ava:Ava_1061 cobalamin B12-binding; PFAM: Radical SAM domain protein; cobalamin B12-binding domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Cobalamin B12-binding. (507 aa)    
Predicted Functional Partners:
Chro_0337
4-vinyl reductase 4VR; PFAM: V4R domain; COGs: COG1719 hydrocarbon binding protein (contains V4R domain); InterPro IPR004096; KEGG: cyh:Cyan8802_1082 4-vinyl reductase 4VR; PFAM: 4-vinyl reductase 4VR; SPTR: 4-vinyl reductase 4VR.
  
  
 0.634
Chro_0340
4-vinyl reductase 4VR; PFAM: V4R domain; COGs: COG1719 hydrocarbon binding protein (contains V4R domain); InterPro IPR004096; KEGG: tel:tlr2301 hypothetical protein; PFAM: 4-vinyl reductase 4VR; SPTR: Tlr2301 protein.
  
  
 0.634
Chro_2504
KEGG: ppp:PHYPADRAFT_83951 hypothetical protein.
       0.608
Chro_2505
Delta-9 acyl-phospholipid desaturase; PFAM: Fatty acid desaturase; COGs: COG1398 Fatty-acid desaturase; InterPro IPR015876:IPR005804; KEGG: cyc:PCC7424_5567 stearoyl-CoA 9-desaturase; PFAM: fatty acid desaturase; PRIAM: Stearoyl-CoA 9-desaturase; SPTR: Stearoyl-CoA 9-desaturase.
       0.515
Chro_1932
Protein of unknown function DUF344; PFAM: Polyphosphate kinase 2 (PPK2); TIGRFAM: polyphosphate kinase 2, PA0141 family; COGs: COG2326 conserved hypothetical protein; InterPro IPR016898:IPR005660; KEGG: cyn:Cyan7425_4669 protein of unknown function DUF344; PFAM: protein of unknown function DUF344; SPTR: Putative uncharacterized protein.
   
    0.439
Chro_2356
Protein of unknown function DUF344; PFAM: Polyphosphate kinase 2 (PPK2); TIGRFAM: polyphosphate:nucleotide phosphotransferase, PPK2 family; COGs: COG2326 conserved hypothetical protein; InterPro IPR016898:IPR005660; KEGG: met:M446_5330 hypothetical protein; PFAM: protein of unknown function DUF344; SPTR: Putative uncharacterized protein.
   
    0.439
Your Current Organism:
Chroococcidiopsis thermalis
NCBI taxonomy Id: 251229
Other names: C. thermalis PCC 7203, Chroococcidiopsis sp. ATCC 27900, Chroococcidiopsis sp. PCC 7203, Chroococcidiopsis thermalis PCC 7203, Chroococcidiopsis thermalis str. PCC 7203
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.