STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Chro_2942PFAM: Major Facilitator Superfamily; COGs: COG2211 Na+/melibiose symporter and related transporter; InterPro IPR011701; KEGG: npu:Npun_R4099 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: Major facilitator superfamily MFS_1. (478 aa)    
Predicted Functional Partners:
Chro_2941
KEGG: npu:Npun_F4656 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.565
Chro_5201
Helix-turn-helix domain protein; PFAM: Helix-turn-helix; InterPro IPR001387; KEGG: mar:MAE_19390 transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; SPTR: Transcriptional regulator.
  
     0.545
Chro_2501
PFAM: Phycobilisome degradation protein nblA; InterPro IPR007574; KEGG: npu:Npun_F2237 phycobilisome degradation protein NblA; PFAM: Phycobilisome degradation protein nblA; SPTR: Phycobilisome degradation protein nblA.
  
     0.478
Chro_3503
KEGG: cch:Cag_1186 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.475
Chro_4389
KEGG: cyc:PCC7424_1569 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.472
Chro_2943
PFAM: Major Facilitator Superfamily; InterPro IPR011701; KEGG: npu:Npun_R4099 major facilitator transporter; PFAM: major facilitator superfamily MFS_1; SPTR: Major facilitator superfamily MFS_1.
 
   
0.449
Chro_5463
PFAM: Carbohydrate-selective porin, OprB family; S-layer homology domain; InterPro IPR001119:IPR007049; KEGG: ava:Ava_3365 S-layer region-like; PFAM: Carbohydrate-selective porin OprB; S-layer domain-containing protein; SPTR: S-layer region-like; TC 1.B.23; Belongs to the OprB family.
  
     0.438
Chro_0004
PFAM: Phycobilisome degradation protein nblA; InterPro IPR007574; KEGG: cyc:PCC7424_1012 phycobilisome degradation protein NblA; PFAM: Phycobilisome degradation protein nblA; SPTR: Phycobilisome degradation protein nblA.
  
     0.414
Chro_0929
PFAM: Carbohydrate-selective porin, OprB family; S-layer homology domain; InterPro IPR001119:IPR007049; KEGG: ava:Ava_3365 S-layer region-like; PFAM: Carbohydrate-selective porin OprB; S-layer domain-containing protein; SPTR: S-layer region-like; TC 1.B.23; Belongs to the OprB family.
  
     0.410
Your Current Organism:
Chroococcidiopsis thermalis
NCBI taxonomy Id: 251229
Other names: C. thermalis PCC 7203, Chroococcidiopsis sp. ATCC 27900, Chroococcidiopsis sp. PCC 7203, Chroococcidiopsis thermalis PCC 7203, Chroococcidiopsis thermalis str. PCC 7203
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